clinUtils - General Utility Functions for Analysis of Clinical Data
Utility functions to facilitate the import, the reporting and analysis of clinical data. Example datasets in 'SDTM' and 'ADaM' format, containing a subset of patients/domains from the 'CDISC Pilot 01 study' are also available as R datasets to demonstrate the package functionalities.
Last updated 4 months ago
3 stars 1.92 score 59 dependencies 3 dependentsa4Core - Automated Affymetrix Array Analysis Core Package
Utility functions for the Automated Affymetrix Array Analysis set of packages.
Last updated 4 months ago
microarrayclassification
1.85 score 12 dependencies 4 dependentsa4Base - Automated Affymetrix Array Analysis Base Package
Base utility functions are available for the Automated Affymetrix Array Analysis set of packages.
Last updated 4 months ago
microarray
1.38 score 69 dependencies 1 dependentsinTextSummaryTable - Creation of in-Text Summary Table
Creation of tables of summary statistics or counts for clinical data (for 'TLFs'). These tables can be exported as in-text table (with the 'flextable' package) for a Clinical Study Report (Word format) or a 'topline' presentation (PowerPoint format), or as interactive table (with the 'DT' package) to an html document for clinical data review.
Last updated 3 months ago
1 stars 1.15 score 104 dependenciesa4Preproc - Automated Affymetrix Array Analysis Preprocessing Package
Utility functions to pre-process data for the Automated Affymetrix Array Analysis set of packages.
Last updated 4 months ago
microarraypreprocessing
1.08 score 2 dependencies 3 dependentsa4Reporting - Automated Affymetrix Array Analysis Reporting Package
Utility functions to facilitate the reporting of the Automated Affymetrix Array Analysis Reporting set of packages.
Last updated 4 months ago
microarray
0.49 score 1 dependencies 1 dependentsa4Classif - Automated Affymetrix Array Analysis Classification Package
Functionalities for classification of Affymetrix microarray data, integrating within the Automated Affymetrix Array Analysis set of packages.
Last updated 4 months ago
microarraygeneexpressionclassification
0.49 score 24 dependencies 1 dependentsesetVis - Visualizations of expressionSet Bioconductor object
Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.
Last updated 4 months ago
visualizationdatarepresentationdimensionreductionprincipalcomponentpathways
0.36 score 50 dependenciesa4 - Automated Affymetrix Array Analysis Umbrella Package
Umbrella package is available for the entire Automated Affymetrix Array Analysis suite of package.
Last updated 4 months ago
microarray
0.23 score 77 dependencies